Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920546.1_cds_XP_016469653.1_62181
CDS Infomation

[gene=LOC107791996] [db_xref=GeneID:107791996] [protein=probable polygalacturonase isoform X2] [protein_id=XP_016469653.1] [location=complement(join(56828..57315,58120..58451,59750..59989,62684..63042))] [gbkey=CDS]
Sequence

ATGTTTCAACTTCAATTACTCCTCTCACTACTCACTTTATCTTTCAGTACCCAGTCATAT
TCTTCCACGTCAGGACTCTCCATCCTCCCATCAAAACCCAACTCCCTATCCATCTCCGTC
ACCAAATTCGGCGCCGCCGGCGACGGCATACACTACGACACCGTTCCAATCCAGAAAGCC
ATAAACGCATGCTCAGAAGCCGTTTCCAAAAACCGGCGTCAATGCCACGTTATCTTCCCG
TCGGGGAAGTACTTAACGGCGACTATATTCCTGAAAACCGGCGTCTTACTGGATATTCAC
CGGAATGCGACAATTTTAGGAGGACCGAGATTAGAGGATTACCCGAAGGAGCGGAACAGC
AAGTGGTACGTAGTACTGGCGGAGGATGCGGCGGATGTAGGGATCACCGGAGGTGGAGAA
ATCAACGGACAGGGATTGAAGTTTGTGCAGAGATTTGATAAGAAGAAAAATGTGATGGTG
AGCTGGAATCACACCGGAGCTTGCCTTGGGGATGAGTGCAGGCCGAGGTTGGTAGGGTTC
ATCGGCTGCCGGAATATTGAAATCTCCGATGTCAGACTCATCGAACCTGCTTATTGGTGT
TTGCATCTTGTACGAAGCGATAACACGTCAATCAGTGATGTAACAATATATGGGGACTTC
AATTCACCTAATAACGATGGTATAGACATAGAGGACTCTAACAATACGGTCATCACCAGA
TGCAACATAAACACAGGAGATGATGCTATCTGTCCAAAGTCATCAACTGGACCTGTCCAC
AACCTCACAGCAACAAACTGCTGGATTCGAACAAAATCTTCTGCCATCAAACTTGGAAGC
GCTAGCTTTTACACGTTCAAGAATTTCTTATTTGACAACATTACAATTTTTGAATCTCAT
AGAGGCCTCGCTCTGCAAATTCGTGATGGAGGAAATGTTAGCGACATCACCTTCTCAAAC
ATAAACATCAGCACAAGATATTACCACCCATCATGGTGGGGAAGAGCAGAGCCTATTTAT
GTGACAACCTGTCCAAGAGATGCAACTTCAAAAGCGGGTTCAATCTCCAATTTGCTATTT
GTTAATATCACATCAACTTCTGAAAACGGCATCTTCTTATCGGGTTCAGGAGGTGGAGTC
CTGAGCAATCTGAAGTTCATAAACATGAACCTAACATACAAGAGATGGACAAAATATCCA
GATGGTTGGGTGGATTACAGGCCAGGATGCCAAGAACTTGTAAAACACCAAACTGCTGGA
GTCATGATGGAGCATATCGATGGTTTGGTTTTCGAAAATGTAGTCATGAAATGGTCTAAT
GATGAATCGATGAGGTGGAATAATCCTTTGGATTTCAGGCCATCGACTGTAAATAACATT
TCTATGCTCAATTTCTACTCCAGATCTTACCAACAATGA

Peptide Sequence

PEP ID

XP_016469653.1
PEP Infomation

PREDICTED: probable polygalacturonase isoform X2 [Nicotiana tabacum]
Sequence

MFQLQLLLSLLTLSFSTQSYSSTSGLSILPSKPNSLSISVTKFGAAGDGIHYDTVPIQKA
INACSEAVSKNRRQCHVIFPSGKYLTATIFLKTGVLLDIHRNATILGGPRLEDYPKERNS
KWYVVLAEDAADVGITGGGEINGQGLKFVQRFDKKKNVMVSWNHTGACLGDECRPRLVGF
IGCRNIEISDVRLIEPAYWCLHLVRSDNTSISDVTIYGDFNSPNNDGIDIEDSNNTVITR
CNINTGDDAICPKSSTGPVHNLTATNCWIRTKSSAIKLGSASFYTFKNFLFDNITIFESH
RGLALQIRDGGNVSDITFSNINISTRYYHPSWWGRAEPIYVTTCPRDATSKAGSISNLLF
VNITSTSENGIFLSGSGGGVLSNLKFINMNLTYKRWTKYPDGWVDYRPGCQELVKHQTAG
VMMEHIDGLVFENVVMKWSNDESMRWNNPLDFRPSTVNNISMLNFYSRSYQQ

Transcript Sequence

Gene sequence data has not been registered.